3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09947

Details:

PFam ID : PF09947

PFam Domain Description : Uncharacterized protein conserved in archaea (DUF2180)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 33

Average sequence length: 66.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09947	D3F8E5_CONWI_1_70	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09947	D3F8E5_CONWI_1_70	100

Sequence based PCA Plot of the family - PF09947 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=37 Length=8
Motif2 Start=19 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay