3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09943

Details:

PFam ID : PF09943

PFam Domain Description : Uncharacterized protein conserved in archaea (DUF2175)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 16

Average sequence length: 92

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09943	A8MAU7_CALMQ_2_102	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09943	A8MAU7_CALMQ_2_102	100

Sequence based PCA Plot of the family - PF09943 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=24 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay