3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09941

Details:

PFam ID : PF09941

PFam Domain Description : Uncharacterized conserved protein (DUF2173)

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 32

Average sequence length: 102.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09941	A8V338_9AQUI_1_70	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09941	D0KXM8_HALNC_2_115	100

Sequence based PCA Plot of the family - PF09941 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=27 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay