3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09940

Details:

PFam ID : PF09940

PFam Domain Description : Domain of unknown function (DUF2172)

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 63

Average sequence length: 351.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09940	A1AY62_PARDP_36_438	88.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09940	A1AY62_PARDP_36_438	100

Sequence based PCA Plot of the family - PF09940 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=326 Length=11
Motif2 Start=77 Length=14
Motif3 Start=139 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay