3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09939

Details:

PFam ID : PF09939

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2171)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 65

Average sequence length: 65.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09939	A9BLG9_DELAS_68_208	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09939	A9H9E8_GLUDA_6_69	100

Sequence based PCA Plot of the family - PF09939 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=43 Length=8
Motif2 Start=1 Length=8
Motif3 Start=17 Length=8
Motif4 Start=34 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay