3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09937

Details:

PFam ID : PF09937

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2169)

Number of Sequence in 50% Dataset : 116

Number of Sequence in Full Dataset : 182

Average sequence length: 268.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09937	A9FT52_SORC5_21_124	87.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09937	Q0BGH3_BURCM_18_405	100

Sequence based PCA Plot of the family - PF09937 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=64 Length=8
Motif4 Start=91 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay