3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09932

Details:

PFam ID : PF09932

PFam Domain Description : Uncharacterized conserved protein (DUF2164)

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 134

Average sequence length: 74.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09932	Q9KG79_BACHD_1_51	96.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09932	C0A4D6_9BACT_3_83	100

Sequence based PCA Plot of the family - PF09932 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=49 Length=8
Motif4 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay