3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09931

Details:

PFam ID : PF09931

PFam Domain Description : Uncharacterized conserved protein (DUF2163)

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 164

Average sequence length: 154.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09931	D4TAH1_9XANT_5_169	61.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09931	A5CD66_ORITB_4_158	100

Sequence based PCA Plot of the family - PF09931 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=17
Motif2 Start=9 Length=8
Motif3 Start=156 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay