3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09929

Details:

PFam ID : PF09929

PFam Domain Description : Uncharacterized conserved protein (DUF2161)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 83

Average sequence length: 113.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09929	A9U7K6_PHYPA_1_83	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09929	E7M955_9BACL_101_221	100

Sequence based PCA Plot of the family - PF09929 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=28 Length=8
Motif3 Start=17 Length=8
Motif4 Start=73 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay