3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09926

Details:

PFam ID : PF09926

PFam Domain Description : Uncharacterized small protein (DUF2158)

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 70

Average sequence length: 48.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09926	E7I5B3_ECOLX_1_46	88.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09926	A3K1C6_9RHOB_4_54	100

Sequence based PCA Plot of the family - PF09926 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=29 Length=18
Motif2 Start=11 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay