3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09924

Details:

PFam ID : PF09924

PFam Domain Description : Uncharacterized conserved protein (DUF2156)

Number of Sequence in 50% Dataset : 183

Number of Sequence in Full Dataset : 679

Average sequence length: 280.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09924	C6E7Z4_GEOSM_57_154	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09924	E9RRN6_9FIRM_21_191	99.7

Sequence based PCA Plot of the family - PF09924 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=70 Length=8
Motif3 Start=42 Length=8
Motif4 Start=96 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay