3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09922

Details:

PFam ID : PF09922

PFam Domain Description : Cell wall-active antibiotics response protein (DUF2154)

Number of Sequence in 50% Dataset : 130

Number of Sequence in Full Dataset : 342

Average sequence length: 99.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09922	F0QX99_VULM7_21_146	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09922	C7R1A3_JONDD_339_459	99.7

Sequence based PCA Plot of the family - PF09922 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=8 Length=18
Motif2 Start=34 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay