3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09919

Details:

PFam ID : PF09919

PFam Domain Description : Uncharacterized conserved protein (DUF2149)

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 87

Average sequence length: 88.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09919	C2M6D9_CAPGI_1_74	27.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09919	Q8TZ74_METKA_24_125	100

Sequence based PCA Plot of the family - PF09919 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=8
Motif2 Start=6 Length=17
Motif3 Start=78 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay