3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09917

Details:

PFam ID : PF09917

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2147)

Number of Sequence in 50% Dataset : 107

Number of Sequence in Full Dataset : 403

Average sequence length: 110.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09917	Q2A236_FRATH_3_62	81.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09917	C6YXA7_9GAMM_35_189	100

Sequence based PCA Plot of the family - PF09917 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=11 Length=18
Motif3 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay