3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09916

Details:

PFam ID : PF09916

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2145)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 45

Average sequence length: 195.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09916	D1AG28_SEBTE_44_240	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09916	B5S2T0_RALSO_54_258	100

Sequence based PCA Plot of the family - PF09916 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=108 Length=8
Motif4 Start=118 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay