3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09911

Details:

PFam ID : PF09911

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2140)

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 89

Average sequence length: 178.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09911	B7DT21_9BACL_1_185	84.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09911	Q9KDN0_BACHD_8_198	100

Sequence based PCA Plot of the family - PF09911 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=30
Motif2 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay