3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09910

Details:

PFam ID : PF09910

PFam Domain Description : Uncharacterized protein conserved in archaea (DUF2139)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 23

Average sequence length: 283.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09910	C3NAA7_SULIY_37_93	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09910	Q9YEL8_AERPE_28_368	100

Sequence based PCA Plot of the family - PF09910 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay