3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09909

Details:

PFam ID : PF09909

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2138)

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 17

Average sequence length: 465.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09909	E1VMB5_9GAMM_6_574	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09909	E1VMB5_9GAMM_6_574	100

Sequence based PCA Plot of the family - PF09909 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay