3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09907

Details:

PFam ID : PF09907

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2136)

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 207

Average sequence length: 73.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09907	D8G3K8_9CYAN_1_27	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09907	A5VX54_PSEP1_106_153	100

Sequence based PCA Plot of the family - PF09907 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=62 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay