3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09906

Details:

PFam ID : PF09906

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2135)

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 44

Average sequence length: 49.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09906	Q54LI8_DICDI_267_328	31.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09906	A0LH84_SYNFM_277_321	95.3

Sequence based PCA Plot of the family - PF09906 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=6 Length=37

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay