3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09905

Details:

PFam ID : PF09905

PFam Domain Description : Uncharacterized conserved protein (DUF2132)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 181

Average sequence length: 63.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09905	Q6AKK7_DESPS_29_64	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09905	C9Y737_9BURK_1_59	100

Sequence based PCA Plot of the family - PF09905 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=28 Length=8
Motif3 Start=13 Length=8
Motif4 Start=40 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay