3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09902

Details:

PFam ID : PF09902

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2129)

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 117

Average sequence length: 69.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09902	C5RBG0_WEIPA_8_78	78.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09902	C5RBG0_WEIPA_8_78	100

Sequence based PCA Plot of the family - PF09902 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=33
Motif2 Start=54 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay