3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09901

Details:

PFam ID : PF09901

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2128)

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 110

Average sequence length: 68

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09901	B7APN6_9BACE_1_43	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09901	A0Q1N8_CLONN_4_37	100

Sequence based PCA Plot of the family - PF09901 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=22 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay