3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09898

Details:

PFam ID : PF09898

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2125)

Number of Sequence in 50% Dataset : 77

Number of Sequence in Full Dataset : 140

Average sequence length: 294.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09898	A7HTH1_PARL1_37_364	86.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09898	A3SSN4_9RHOB_19_336	100

Sequence based PCA Plot of the family - PF09898 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=194 Length=8
Motif4 Start=271 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay