3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09893

Details:

PFam ID : PF09893

PFam Domain Description : Uncharacterized protein conserved in archaea (DUF2120)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 20

Average sequence length: 132.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09893	D7DRN2_METV3_6_236	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09893	Q8TY22_METKA_10_176	100

Sequence based PCA Plot of the family - PF09893 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay