3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09892

Details:

PFam ID : PF09892

PFam Domain Description : Uncharacterized protein conserved in archaea (DUF2119)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 23

Average sequence length: 186.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09892	D7DRN2_METV3_6_236	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09892	D7DRN2_METV3_6_236	100

Sequence based PCA Plot of the family - PF09892 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=1 Length=8
Motif3 Start=103 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay