3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09889

Details:

PFam ID : PF09889

PFam Domain Description : Uncharacterized protein containing a Zn-ribbon (DUF2116)

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 33

Average sequence length: 51.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09889	A4C8R4_9GAMM_29_61	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09889	E1K4H8_9EURY_2_60	100

Sequence based PCA Plot of the family - PF09889 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay