3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09887

Details:

PFam ID : PF09887

PFam Domain Description : Uncharacterized protein conserved in archaea (DUF2114)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 31

Average sequence length: 435.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09887	Q649M0_9ARCH_37_476	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09887	Q649M0_9ARCH_37_476	100

Sequence based PCA Plot of the family - PF09887 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=219 Length=8
Motif2 Start=116 Length=8
Motif3 Start=408 Length=17
Motif4 Start=189 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay