3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09884

Details:

PFam ID : PF09884

PFam Domain Description : Uncharacterized protein conserved in archaea (DUF2111)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 35

Average sequence length: 80.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09884	Q0W3M0_UNCMA_23_106	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09884	Q0W3M0_UNCMA_23_106	100

Sequence based PCA Plot of the family - PF09884 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=18 Length=8
Motif3 Start=29 Length=8
Motif4 Start=54 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay