3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09875

Details:

PFam ID : PF09875

PFam Domain Description : Uncharacterized protein conserved in archaea (DUF2102)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 36

Average sequence length: 99.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09875	E3GYT2_METFV_46_259	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09875	Q0W5J1_UNCMA_1_93	100

Sequence based PCA Plot of the family - PF09875 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=27 Length=8
Motif4 Start=64 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay