3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09872

Details:

PFam ID : PF09872

PFam Domain Description : Uncharacterized protein conserved in archaea (DUF2099)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 41

Average sequence length: 249.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09872	F0TAZ7_METSL_7_105	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09872	A0B8M2_METTP_4_261	100

Sequence based PCA Plot of the family - PF09872 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=56 Length=8
Motif2 Start=213 Length=8
Motif3 Start=112 Length=8
Motif4 Start=96 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay