3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09864

Details:

PFam ID : PF09864

PFam Domain Description : Membrane-bound lysozyme-inhibitor of c-type lysozyme

Number of Sequence in 50% Dataset : 117

Number of Sequence in Full Dataset : 313

Average sequence length: 72.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09864	E6W0Q7_DESIS_49_146	93.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09864	Q9Z6D4_HAEDU_54_134	100

Sequence based PCA Plot of the family - PF09864 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=42 Length=8
Motif2 Start=1 Length=8
Motif3 Start=33 Length=8
Motif4 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay