3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09863

Details:

PFam ID : PF09863

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2090)

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 100

Average sequence length: 297.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09863	E0SMN5_DICD3_329_417	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09863	D5BQ18_PUNMI_340_653	100

Sequence based PCA Plot of the family - PF09863 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=119 Length=14
Motif2 Start=276 Length=11
Motif3 Start=53 Length=8
Motif4 Start=218 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay