3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09861

Details:

PFam ID : PF09861

PFam Domain Description : Domain of unknown function (DUF2088)

Number of Sequence in 50% Dataset : 79

Number of Sequence in Full Dataset : 346

Average sequence length: 195.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09861	B8C5B9_THAPS_86_181	93.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09861	C1EGZ4_MICSR_154_371	100

Sequence based PCA Plot of the family - PF09861 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=137 Length=8
Motif2 Start=56 Length=8
Motif3 Start=161 Length=11
Motif4 Start=92 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay