3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09860

Details:

PFam ID : PF09860

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2087)

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 195

Average sequence length: 71.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09860	C3B088_BACMY_1_53	42.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09860	C7MFZ3_BRAFD_86_160	100

Sequence based PCA Plot of the family - PF09860 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=28 Length=8
Motif3 Start=61 Length=8
Motif4 Start=43 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay