3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09859

Details:

PFam ID : PF09859

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2086)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 108

Average sequence length: 166.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09859	A9F5I3_SORC5_91_167	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09859	B9BGA4_9BURK_74_202	99.0

Sequence based PCA Plot of the family - PF09859 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=68 Length=8
Motif3 Start=29 Length=11
Motif4 Start=55 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay