3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09857

Details:

PFam ID : PF09857

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2084)

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 51

Average sequence length: 82.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09857	D9XND3_9ACTO_82_165	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09857	E2WQA2_ECOLX_1_72	100

Sequence based PCA Plot of the family - PF09857 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=8 Length=20
Motif2 Start=64 Length=8
Motif3 Start=34 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay