3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09850

Details:

PFam ID : PF09850

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2077)

Number of Sequence in 50% Dataset : 124

Number of Sequence in Full Dataset : 385

Average sequence length: 201.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09850	D2R0L9_PIRSD_83_244	94.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09850	C5ALC7_BURGB_6_228	100

Sequence based PCA Plot of the family - PF09850 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=99 Length=8
Motif3 Start=122 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay