3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09848

Details:

PFam ID : PF09848

PFam Domain Description : Uncharacterized conserved protein (DUF2075)

Number of Sequence in 50% Dataset : 141

Number of Sequence in Full Dataset : 331

Average sequence length: 293.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09848	Q9HM06_THEAC_17_497	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09848	A1WH43_VEREI_245_636	100

Sequence based PCA Plot of the family - PF09848 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=227 Length=8
Motif2 Start=494 Length=20
Motif3 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay