3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09845

Details:

PFam ID : PF09845

PFam Domain Description : Zn-ribbon containing protein (DUF2072)

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 60

Average sequence length: 97.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09845	D1JD11_9ARCH_1_58	84.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09845	D8J4G1_HALJB_2_156	100

Sequence based PCA Plot of the family - PF09845 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=118 Length=8
Motif3 Start=21 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay