3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09844

Details:

PFam ID : PF09844

PFam Domain Description : Uncharacterized conserved protein (COG2071)

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 158

Average sequence length: 210.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09844	A1ZH23_9BACT_23_249	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09844	E8QYG8_ISOPI_35_269	100

Sequence based PCA Plot of the family - PF09844 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=219 Length=8
Motif2 Start=164 Length=8
Motif3 Start=9 Length=8
Motif4 Start=67 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay