3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09838

Details:

PFam ID : PF09838

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2065)

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 216

Average sequence length: 56.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09838	E1YFS8_9DELT_17_53	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09838	A0LFR0_SYNFM_6_63	100

Sequence based PCA Plot of the family - PF09838 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=6 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay