3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09836

Details:

PFam ID : PF09836

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2063)

Number of Sequence in 50% Dataset : 97

Number of Sequence in Full Dataset : 327

Average sequence length: 91.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09836	Q11QI1_CYTH3_8_95	85.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09836	Q6MA09_PARUW_19_131	100

Sequence based PCA Plot of the family - PF09836 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=67 Length=8
Motif3 Start=82 Length=8
Motif4 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay