3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09829

Details:

PFam ID : PF09829

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2057)

Number of Sequence in 50% Dataset : 102

Number of Sequence in Full Dataset : 261

Average sequence length: 171.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09829	A6D657_9VIBR_1_117	79.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09829	E8LMY5_9GAMM_45_277	100

Sequence based PCA Plot of the family - PF09829 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=35 Length=8
Motif4 Start=213 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay