3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09828

Details:

PFam ID : PF09828

PFam Domain Description : Chromate resistance exported protein

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 122

Average sequence length: 129.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09828	B8DRA6_DESVM_253_355	15.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09828	D5P5W9_9MYCO_3_143	100

Sequence based PCA Plot of the family - PF09828 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=57 Length=8
Motif3 Start=10 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay