3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09827

Details:

PFam ID : PF09827

PFam Domain Description : CRISPR associated protein Cas2

Number of Sequence in 50% Dataset : 120

Number of Sequence in Full Dataset : 847

Average sequence length: 81.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09827	E1K428_9EURY_3_179	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09827	A4WK03_PYRAR_3_64	98.3

Sequence based PCA Plot of the family - PF09827 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=60 Length=8
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay