3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09826

Details:

PFam ID : PF09826

PFam Domain Description : Beta propeller domain

Number of Sequence in 50% Dataset : 84

Number of Sequence in Full Dataset : 127

Average sequence length: 444.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09826	E1K428_9EURY_3_179	80.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09826	F0Y744_9STRA_305_898	100

Sequence based PCA Plot of the family - PF09826 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=118 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay