3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09825

Details:

PFam ID : PF09825

PFam Domain Description : Biotin-protein ligase, N terminal

Number of Sequence in 50% Dataset : 72

Number of Sequence in Full Dataset : 160

Average sequence length: 237.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09825	B6ACG6_CRYMR_40_302	88.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09825	Q4P7S4_USTMA_2_485	100

Sequence based PCA Plot of the family - PF09825 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=150 Length=8
Motif3 Start=185 Length=11
Motif4 Start=76 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay