3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09824

Details:

PFam ID : PF09824

PFam Domain Description : ArsR transcriptional regulator

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 21

Average sequence length: 152.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09824	O29826_ARCFU_8_168	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09824	O29826_ARCFU_8_168	100

Sequence based PCA Plot of the family - PF09824 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=18
Motif2 Start=11 Length=8
Motif3 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay