3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09822

Details:

PFam ID : PF09822

PFam Domain Description : ABC-type uncharacterized transport system

Number of Sequence in 50% Dataset : 207

Number of Sequence in Full Dataset : 383

Average sequence length: 227.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09822	E8U4Q0_DEIML_172_312	80.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09822	A8ZTT9_DESOH_33_470	100

Sequence based PCA Plot of the family - PF09822 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=248 Length=8
Motif4 Start=156 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay